Différences

Ci-dessous, les différences entre deux révisions de la page.

--- pelicans [2014/11/30 14:54] – [serveur judith] gerard
+++ pelicans [2014/12/01 12:51] – [metis] gerard
@@ Ligne 25: / Ligne 25: @@
   * modifier Makefile.in
   * /local/apps/metis-4.0.3
+  * dans Lib/proto.h, on commente les déclarations de drand48, srand48 et ilog2 sinon pelicans/isis ne compilera pas
 <code>
 [devel1@judith ~/metis-4.0.3]$ make | & tee MAKE.LOG
 </code>
-==== pelicans ====
+==== pelicans sans metis ====
+<code>
+[devel1@judith ~/isis-4.1.0]$ diff PELICANS/etc/extra-Linux.mak-ori PELICANS/etc/extra-Linux.mak
+c10
+< WITH_MPI      = 0
+---
+> WITH_MPI      = 1
+c148
+< MPIRUN = /home/semar/pelican/ExternalPackages/Linux/openmpi/bin/mpirun
+---
+> MPIRUN = /usr/lib64/openmpi/bin/mpirun
+,156c155,156
+< CPPFLAGS += -I$(MPIPATH)/include
+< MPIPATH   = $(EXTRA_LIBS_DIR)/openmpi
+---
+> CPPFLAGS += -I/usr/include/openmpi-x86_64 -I$(MPIPATH)/include
+> MPIPATH   = /usr/lib64/openmpi
+</code>
+<code>
+[devel1@judith ~/isis-4.1.0]$ make install | & tee INSTALL.LOG
+...
+--------------------------------------------------
+| Test is successful
+--------------------------------------------------
+**************************************************
+* number of successful tests: 214
+* number of  ambiguous tests: 0
+* number of    failing tests: 0
+**************************************************
+*** Elapsed time in second:
+user 0.084841
+****
+* target test_install completed
+****************************************
+make[1]: Leaving directory `/local/apps/isis-4.1.0/ISIS'
+</code>
+on passe les tests MPI
+<code>
+[devel1@judith ~/isis-4.1.0]$ source /local/apps/isis-4.1.0/bin/init.csh
+[devel1@judith ~/isis-4.1.0]$ make test_MPI
+...
+****************************************
+make[1]: Leaving directory `/local/apps/isis-4.1.0/ISIS'
+=================================================================================
+          Test MPI
+=================================================================================
+*** Operating system: Linux
+*** Executable: /local/apps/isis-4.1.0/ISIS/lib/Linux-gcc/opt0.exe
+*** Data file: /local/apps/isis-4.1.0/PELICANS/etc/ExternalAPI/MPI/tests_enabling/data.pel
+*** PELICANS library
+       compiler          : gcc
+       compilation date  : Nov 29 2014
+       compilation level : opt0
+----------------------------------------------------
+|  Unit tests performed on class PEL_Expression :
+====================================================
+| ...                   MPI_enabling_test kind :  OK
+| ...             MPI_enabling_test evaluation :  OK
+====================================================
+|  End of 2 tests of class PEL_Expression in 2.4e-05 s
+----------------------------------------------------
+---- Success of all unit tests ----
+*** Elapsed time in second:
+user 0.00017
+</code>
+==== pelicans avec metis ====
 <code>
@@ Ligne 57: / Ligne 141: @@
 </code>
+et on lance la compilation
+<code>
+[devel1@judith ~/isis-4.1.0]$ make install | & tee INSTALL.LOG
+=================================================================================
+          Configuration file
+=================================================================================
+Hostname: judith.cmi.univ-mrs.fr
+Compiler: gcc
+Architecture-Makefile searched in:
+   /local/apps/isis-4.1.0/PELICANS/etc
+           judith.cmi.univ-mrs.fr-gcc
+           judith.cmi.univ-mrs.fr-undef
+           Linux_3.10.0-gcc
+        *  Linux-gcc    /local/apps/isis-4.1.0/PELICANS/etc/Linux-gcc.mak
+           undef-gcc
+           Linux_3.10.0-undef
+           Linux-undef
+Extra-Makefile searched in:
+   /local/apps/isis-4.1.0/PELICANS/etc
+           judith.cmi.univ-mrs.fr-gcc
+           judith.cmi.univ-mrs.fr-undef
+           Linux_3.10.0-gcc
+           Linux-gcc
+           undef-gcc
+           Linux_3.10.0-undef
+        *  Linux-undef  /local/apps/isis-4.1.0/PELICANS/etc/extra-Linux.mak
+Compiler Architecture name: Linux-gcc
+External libraries:
+   MPI: enabled
+   JAVA: disabled
+   METIS: enabled
+=================================================================================
+          Installing PELICANS, level=opt0
+=================================================================================
+make[1]: Entering directory `/local/apps/isis-4.1.0/PELICANS'
+pel: building Makefile
+make[2]: Entering directory `/local/apps/isis-4.1.0/PELICANS'
+pel: compiling EXT_MPIcommunicator.cc
+pel: compiling EXT_MPI_API.cc
+pel: compiling EXT_METISsplitting.cc
+In file included from /local/apps/metis-4.0.3/Lib/metis.h:36:0,
+                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+/local/apps/metis-4.0.3/Lib/proto.h:458:16: error: declaration of ‘double drand48()’ has a different exception specifier
+ double drand48();
+                ^
+In file included from /local/apps/metis-4.0.3/Lib/metis.h:17:0,
+                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+/usr/include/stdlib.h:389:15: error: from previous declaration ‘double drand48() throw ()’
+ extern double drand48 (void) __THROW;
+               ^
+In file included from /local/apps/metis-4.0.3/Lib/metis.h:36:0,
+                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+/local/apps/metis-4.0.3/Lib/proto.h:459:18: error: declaration of ‘void srand48(long int)’ has a different exception specifier
+ void srand48(long);
+                  ^
+In file included from /local/apps/metis-4.0.3/Lib/metis.h:17:0,
+                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+/usr/include/stdlib.h:403:13: error: from previous declaration ‘void srand48(long int) throw ()’
+ extern void srand48 (long int __seedval) __THROW;
+             ^
+make[2]: *** [/local/apps/isis-4.1.0/PELICANS/lib/Linux-gcc/opt0/EXT_METISsplitting.o] Error 1
+make[2]: Leaving directory `/local/apps/isis-4.1.0/PELICANS'
+make[2]: Entering directory `/local/apps/isis-4.1.0/PELICANS'
+pel: compiling EXT_METISsplitting.cc
+In file included from /local/apps/metis-4.0.3/Lib/metis.h:36:0,
+                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+/local/apps/metis-4.0.3/Lib/proto.h:458:16: error: declaration of ‘double drand48()’ has a different exception specifier
+ double drand48();
+                ^
+In file included from /local/apps/metis-4.0.3/Lib/metis.h:17:0,
+                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+/usr/include/stdlib.h:389:15: error: from previous declaration ‘double drand48() throw ()’
+ extern double drand48 (void) __THROW;
+               ^
+In file included from /local/apps/metis-4.0.3/Lib/metis.h:36:0,
+                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+/local/apps/metis-4.0.3/Lib/proto.h:459:18: error: declaration of ‘void srand48(long int)’ has a different exception specifier
+ void srand48(long);
+                  ^
+In file included from /local/apps/metis-4.0.3/Lib/metis.h:17:0,
+                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+/usr/include/stdlib.h:403:13: error: from previous declaration ‘void srand48(long int) throw ()’
+ extern void srand48 (long int __seedval) __THROW;
+             ^
+make[2]: *** [/local/apps/isis-4.1.0/PELICANS/lib/Linux-gcc/opt0/EXT_METISsplitting.o] Error 1
+make[2]: Leaving directory `/local/apps/isis-4.1.0/PELICANS'
+make[1]: *** [lib/Linux-gcc/libpel0.so] Error 2
+make[1]: Leaving directory `/local/apps/isis-4.1.0/PELICANS'
+make: *** [PELICANS0] Error 2
+</code>
 ====== pelicans ======