Différences

Ci-dessous, les différences entre deux révisions de la page.

--- pelicans [2014/12/01 11:51] – [metis] gerard
+++ pelicans [2017/08/25 07:56] (Version actuelle) – modification externe 127.0.0.1
@@ Ligne 11: / Ligne 11: @@
 [henry@judith ~]$ isis_run -h
 </code>
-  * FIXME: ajouter MPI, METIS, et java ?
-  * on peut lancer l'itnerface graphique xisis
+  * on peut lancer l'itnerface graphique **xisis**
   * pour accéder au tutoriel depuis xisis, aller dans Preferences, pdf-open, et remplacer acroread par evince
@@ Ligne 177: / Ligne 177: @@
           Installing PELICANS, level=opt0
 =================================================================================
-make[1]: Entering directory `/local/apps/isis-4.1.0/PELICANS'
+...
-pel: building Makefile
+| Test is successful
-make[2]: Entering directory `/local/apps/isis-4.1.0/PELICANS'
+--------------------------------------------------
-pel: compiling EXT_MPIcommunicator.cc
+--------------------------------------------------
-pel: compiling EXT_MPI_API.cc
+| ISIS/IHM/samples/WallConduction/DoRun
-pel: compiling EXT_METISsplitting.cc
+--------------------------------------------------
-In file included from /local/apps/metis-4.0.3/Lib/metis.h:36:0,
+| Test is successful
-                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+--------------------------------------------------
-/local/apps/metis-4.0.3/Lib/proto.h:458:16: error: declaration of ‘double drand48()’ has a different exception specifier
- double drand48();
+**************************************************
-                ^
+* number of successful tests: 214
-In file included from /local/apps/metis-4.0.3/Lib/metis.h:17:0,
+* number of  ambiguous tests: 0
-                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+* number of    failing tests: 0
-/usr/include/stdlib.h:389:15: error: from previous declaration ‘double drand48() throw ()’
+**************************************************
- extern double drand48 (void) __THROW;
-               ^
+*** Elapsed time in second:
-In file included from /local/apps/metis-4.0.3/Lib/metis.h:36:0,
+user 0.068729
-                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
-/local/apps/metis-4.0.3/Lib/proto.h:459:18: error: declaration of ‘void srand48(long int)’ has a different exception specifier
- void srand48(long);
+****
-                  ^
+* target test_install completed
-In file included from /local/apps/metis-4.0.3/Lib/metis.h:17:0,
+****************************************
-                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
+make[1]: Leaving directory `/local/apps/isis-4.1.0/ISIS'
-/usr/include/stdlib.h:403:13: error: from previous declaration ‘void srand48(long int) throw ()’
- extern void srand48 (long int __seedval) __THROW;
-             ^
-make[2]: *** [/local/apps/isis-4.1.0/PELICANS/lib/Linux-gcc/opt0/EXT_METISsplitting.o] Error 1
-make[2]: Leaving directory `/local/apps/isis-4.1.0/PELICANS'
-make[2]: Entering directory `/local/apps/isis-4.1.0/PELICANS'
-pel: compiling EXT_METISsplitting.cc
-In file included from /local/apps/metis-4.0.3/Lib/metis.h:36:0,
-                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
-/local/apps/metis-4.0.3/Lib/proto.h:458:16: error: declaration of ‘double drand48()’ has a different exception specifier
- double drand48();
-                ^
-In file included from /local/apps/metis-4.0.3/Lib/metis.h:17:0,
-                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
-/usr/include/stdlib.h:389:15: error: from previous declaration ‘double drand48() throw ()’
- extern double drand48 (void) __THROW;
-               ^
-In file included from /local/apps/metis-4.0.3/Lib/metis.h:36:0,
-                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
-/local/apps/metis-4.0.3/Lib/proto.h:459:18: error: declaration of ‘void srand48(long int)’ has a different exception specifier
- void srand48(long);
-                  ^
-In file included from /local/apps/metis-4.0.3/Lib/metis.h:17:0,
-                 from /local/apps/isis-4.1.0/PELICANS/packages/ExternalAPI/METIS_4.0.1/src/EXT_METISsplitting.cc:65:
-/usr/include/stdlib.h:403:13: error: from previous declaration ‘void srand48(long int) throw ()’
- extern void srand48 (long int __seedval) __THROW;
-             ^
-make[2]: *** [/local/apps/isis-4.1.0/PELICANS/lib/Linux-gcc/opt0/EXT_METISsplitting.o] Error 1
-make[2]: Leaving directory `/local/apps/isis-4.1.0/PELICANS'
-make[1]: *** [lib/Linux-gcc/libpel0.so] Error 2
-make[1]: Leaving directory `/local/apps/isis-4.1.0/PELICANS'
-make: *** [PELICANS0] Error 2
 </code>
+==== Test parallèle (tutorial) ====
+on modifie le data.pel, comme indiqué dans le tutorial (p72):
+<code>
+[ghenry@holopherne RoomFire]$ grep parallel *.pel
+data.pel:execution_mode="parallel"
+[ghenry@holopherne RoomFire]$ grep splitt *.pel
+data.pel:splitting_strategy="METIS"
+</code>
+et on lance le calcul, sur une machine qui a 30 slots (CentOS 7, openmpi openmpi-1.6.4-3):
+<code>
+[ghenry@holopherne RoomFire]$ which mpirun
+/usr/lib64/openmpi/bin/mpirun
+</code>
+<code>
+[ghenry@holopherne RoomFire]$ isis_run data.pel resu -np 2
+Process #0 : launched on holopherne.cmi.univ-mrs.fr (79758).
+Process #1 : launched on holopherne.cmi.univ-mrs.fr (79759).
+Process #1 : terminated.
+Process #0 : terminated.
+Process #0 : launched on holopherne.cmi.univ-mrs.fr (79766).
+Process #1 : launched on holopherne.cmi.univ-mrs.fr (79767).
+terminate called after throwing an instance of 'PEL_Exceptions::InternalError'
+--------------------------------------------------------------------------
+mpirun noticed that process rank 1 with PID 79767 on node holopherne.cmi.univ-mrs.fr exited on signal 11 (Segmentation fault).
+--------------------------------------------------------------------------
+</code>
+ce bug est dû à une mauvaise version du fichier ''CALIFS/packages/simulators/heat_transfer/src/IS_Enthalpy.cc''. On le remplace, puis:
+<code>
+make APPLI0
+</code>
+et ça passe
 ====== pelicans ======