Les deux révisions précédentes Révision précédente Prochaine révision | Révision précédenteDernière révisionLes deux révisions suivantes |
hypre_patches [2009/07/16 22:14] – gerard | hypre_patches [2009/07/17 17:39] – gerard |
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* le configure cree le fichier Makefile.config depuis le template Makefile.config.in dans le répertoire config | * le configure cree le fichier Makefile.config depuis le template Makefile.config.in dans le répertoire config |
* après exécution de configure, on modifie le fichier Makefile.config pour qu'il prenne en compte la sunperf | * après exécution de configure, on modifie le fichier Makefile.config pour qu'il prenne en compte la sunperf |
* et on modifie le script babel-runtime/libtool pour supprimer ''-z text'' à l'édition de liens FIXME | * <del>et on modifie le script babel-runtime/libtool pour supprimer ''-z text'' à l'édition de liens</del> |
| * {{do_work.sh|script}} pour recompiler hypre |
| |
====== détection architecture ====== | ====== détection architecture ====== |
Version=`$UNAME -r` | Version=`$UNAME -r` |
</code> | </code> |
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| |
| |
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</code></del> | </code></del> |
| |
| c'est un bug spécifique à la plateforme x86_64, il faut ajouter un flag d'optimisation (ou -fast par exemple) |
| |
====== checking for Fortran name-mangling scheme... unknown ====== | ====== checking for Fortran name-mangling scheme... unknown ====== |
| |
| |
| ====== Tests avec programme hmm ====== |
| ===== SS12 + HPC 6 ===== |
| <code> |
| nemo-henry% module unload hpc82 ss12u1 ; module load hpc ss12 |
| nemo-henry% which mpcc |
| /opt/SUNWhpc/bin/mpcc |
| nemo-henry% make clean |
| Nettoyage |
| rm -f *.o *.mod *.fig *.vtk; |
| nemo-henry% make -f Makefile.hmm hmm |
| complete: Command not found |
| complete: Command not found |
| mpcc -g -O5 -m64 -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -c mpi_sol_hypre.c |
| mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c mod_dessin.f90 |
| mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c mod_maillage.f90 |
| mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c mod_castests.f90 |
| mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c mod_reslin.f90 |
| mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c mod_interface_hypre.f90 |
| mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c hmm.f90 |
| complete: Command not found |
| complete: Command not found |
| complete: Command not found |
| echo /opt/SUNWhpc/bin |
| /opt/SUNWhpc/bin |
| mpf90 -o hmm mpi_sol_hypre.o mod_dessin.o mod_maillage.o mod_castests.o mod_reslin.o mod_interface_hypre.o hmm.o -L/local/apps/lib/amd64/opt0/lib -R/local/apps/lib/amd64/opt0/lib -L/local/apps/lib/amd64/opt0/../babel-runtime/sidl/.libs -lbHYPREClient-C -lbHYPREClient-CX -lbHYPREClient-F -lbHYPRE -lsidl -ldl -lxml2 -m64 -g -O5 -m64 -xlic_lib=sunperf -L/opt/SUNWhpc/bin/../lib/amd64 -L/local/apps/lib/amd64/opt0/lib -lHYPRE -lm -L/opt/SUNWhpc/bin/../lib/amd64 -lmpi -lfsu -lsunmath -lm -lmtsk |
| nemo-henry% mprun -np 4 hmm |
| Paradigme HFV (solveur: HYPRE, figures: aucun) |
| nutest= 1 typepoly= -9 |
| ndiv= 200 nb sommets= 40401 nb rectangles= 40000 |
| nb aretes= 80400 nb aretes internes= 79600 |
| \nRenumerotation des aretes: 8 passages, 5.16E-02 secondes |
| \nzeta= 4.999999999999778E-01 aire totale= 1.000000000001004 pas= 7.07E-03 |
| |
| ***Resolution HYPRE (PCG+AMG)*** Iterations = 8, Residu = 5.693808e-08 |
| |
| pmin 4.185951532810916E-6 \t\t pmax 0.062498116067422324 |
| Erreurs relatives:\n\tL2 p= 4.257483975064142E-5 \t Linf p= 3.607706907963071E-5 |
| \tL2 gradp= 1.4012123382881934E-5 |
| \ntemps execution 7.2776513 |
| </code> |
| |
| ===== SS12u1 + HPC 8.2 ===== |
| <code> |
| nemo-henry% module unload hpc ss12; module load hpc82 ss12u1 |
| nemo-henry% make clean |
| nemo-henry% make -f Makefile.hmm hmm |
| nemo-henry% mpirun -np 4 hmm |
| [nemo:28041] *** Process received signal *** |
| [nemo:28041] Signal: Segmentation Fault (11) |
| [nemo:28041] Signal code: Address not mapped (1) |
| [nemo:28041] Failing at address: 6e65706f6c64 |
| [nemo:28044] *** Process received signal *** |
| [nemo:28044] Signal: Segmentation Fault (11) |
| [nemo:28044] Signal code: Address not mapped (1) |
| [nemo:28044] Failing at address: 6e65706f6c64 |
| [nemo:28047] *** Process received signal *** |
| [nemo:28047] Signal: Segmentation Fault (11) |
| [nemo:28047] Signal code: Address not mapped (1) |
| [nemo:28047] Failing at address: 6e65706f6c64 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2 |
| /lib/amd64/libc.so.1:0xd71b6 |
| /lib/amd64/libc.so.1:0xcbab2 |
| 0x6e65706f6c64 [ Signal 11 (SEGV)] |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28 |
| /local/henry/droniou_hypre/hmm:MAIN_+0xab |
| /local/henry/droniou_hypre/hmm:main+0x3d |
| /local/henry/droniou_hypre/hmm:0x2c5dc |
| [nemo:28041] *** End of error message *** |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2 |
| /lib/amd64/libc.so.1:0xd71b6 |
| /lib/amd64/libc.so.1:0xcbab2 |
| 0x6e65706f6c64 [ Signal 11 (SEGV)] |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28 |
| /local/henry/droniou_hypre/hmm:MAIN_+0xab |
| /local/henry/droniou_hypre/hmm:main+0x3d |
| /local/henry/droniou_hypre/hmm:0x2c5dc |
| [nemo:28044] *** End of error message *** |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2 |
| /lib/amd64/libc.so.1:0xd71b6 |
| /lib/amd64/libc.so.1:0xcbab2 |
| 0x6e65706f6c64 [ Signal 11 (SEGV)] |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28 |
| /local/henry/droniou_hypre/hmm:MAIN_+0xab |
| /local/henry/droniou_hypre/hmm:main+0x3d |
| /local/henry/droniou_hypre/hmm:0x2c5dc |
| [nemo:28047] *** End of error message *** |
| [nemo:28050] *** Process received signal *** |
| [nemo:28050] Signal: Segmentation Fault (11) |
| [nemo:28050] Signal code: Address not mapped (1) |
| [nemo:28050] Failing at address: 6e65706f6c64 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2 |
| /lib/amd64/libc.so.1:0xd71b6 |
| /lib/amd64/libc.so.1:0xcbab2 |
| 0x6e65706f6c64 [ Signal 11 (SEGV)] |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110 |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd |
| /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28 |
| /local/henry/droniou_hypre/hmm:MAIN_+0xab |
| /local/henry/droniou_hypre/hmm:main+0x3d |
| /local/henry/droniou_hypre/hmm:0x2c5dc |
| [nemo:28050] *** End of error message *** |
| -------------------------------------------------------------------------- |
| mpirun noticed that process rank 0 with PID 28041 on node nemo exited on signal 11 (Segmentation Fault). |
| -------------------------------------------------------------------------- |
| 3 total processes killed (some possibly by mpirun during cleanup) |
| |
| </code> |