Afficher la pageAnciennes révisionsLiens de retourHaut de page Cette page est en lecture seule. Vous pouvez afficher le texte source, mais ne pourrez pas le modifier. Contactez votre administrateur si vous pensez qu'il s'agit d'une erreur. * le configure cree le fichier Makefile.config depuis le template Makefile.config.in dans le répertoire config * après exécution de configure, on modifie le fichier Makefile.config pour qu'il prenne en compte la sunperf * <del>et on modifie le script babel-runtime/libtool pour supprimer ''-z text'' à l'édition de liens</del> * {{do_work.sh|script}} pour recompiler hypre ====== détection architecture ====== * fait par le script src/tarch, mais ne donne pas le meme resultat sur sparc et amd64. On fait la modif suivante: <code> > diff -u src/tarch.ori src/tarch --- src/tarch.ori 2006-09-23 00:05:44.000000000 +0200 +++ src/tarch 2009-07-16 09:07:01.407215193 +0200 @@ -45,6 +45,13 @@ IRIX64|IRIX) FARCH=$LARCH ; break ;; Linux|LINUX) FARCH=LINUX ; break ;; i586|i486|i86pc) + if [ $GARCH -eq solaris ] ; then + FARCH=solaris + else + GARCH=$LARCH + fi + break ;; + SunOS) GARCH=$LARCH ;; sun4*) Version=`$UNAME -r` </code> ====== ld: fatal: relocations remain against allocatable but non-writable sections ====== on peut reproduire cette erreur avec les 2 lignes suivantes: <code> > pwd /local/apps/src/hypre-2.0.0/src/babel-runtime/sidl mpcc -DHAVE_CONFIG_H -I. -I. -I. -I/usr/include/libxml2 -I/usr/java/include -I/usr/java/include/solaris -I./../sidlx -dalign -xlic_lib=sunperf -I/opt/SUNWhpc/HPC6.0/include -xmodel=medium -m64 -D_REENTRANT -c sidl_BaseClass_Impl.c -KPIC -DPIC -o .libs/sidl_BaseClass_Impl.o /usr/ccs/bin/ld -G -z text -h libsidl-1.0.0.so -o .libs/libsidl-1.0.0.so .libs/sidl_BaseClass_Impl.o \ -R/opt/SUNWhpc/HPC6.0/lib/amd64 -R/usr/lib -L/opt/SUNWhpc/HPC6.0/lib/amd64 -ldl -L/usr/lib -lxml2 -lz -lm -lsocket -lnsl -lpthread -lc Text relocation remains referenced against symbol offset in file sidl_BaseInterface_deleteRef 0x215 .libs/sidl_BaseClass_Impl.o sidl_BaseInterface_deleteRef 0x651 .libs/sidl_BaseClass_Impl.o sidl_BaseClass_deleteRef 0x558 .libs/sidl_BaseClass_Impl.o sidl_BaseInterface_addRef 0x6e8 .libs/sidl_BaseClass_Impl.o ld: fatal: relocations remain against allocatable but non-writable sections </code> et la faire disparaître si on supprime ''-z text'', mais est ce normal? voir [[http://dlc.sun.com/pdf/819-5263/819-5263.pdf|3.4.182 –ztext]] patch <del><code> > diff -u ../../../src/babel-runtime/m4/libtool.m4.ori ../../../src/babel-runtime/m4/libtool.m4 --- ../../../src/babel-runtime/m4/libtool.m4.ori 2005-11-14 22:20:09.000000000 +0100 +++ ../../../src/babel-runtime/m4/libtool.m4 2009-07-16 13:43:50.839538559 +0200 @@ -5845,7 +5845,7 @@ ;; solaris*) - _LT_AC_TAGVAR(no_undefined_flag, $1)=' -z text' + _LT_AC_TAGVAR(no_undefined_flag, $1)=' -z textoff' if test "$GCC" = yes; then _LT_AC_TAGVAR(archive_cmds, $1)='$CC -shared ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' _LT_AC_TAGVAR(archive_expsym_cmds, $1)='$echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~$echo "local: *; };" >> $lib.exp~ </code></del> c'est un bug spécifique à la plateforme x86_64, il faut ajouter un flag d'optimisation (ou -fast par exemple) ====== checking for Fortran name-mangling scheme... unknown ====== cette erreur concerne l'interface C-Fortran. Le configure semble trouver que c'est correct 2 fois, et échoue 1 fois. \ Il faut ajouter l'option: ''-ext_names=plain'' pour que le programme de test compile. Mais est ce que c'est à faire tout le temps? voir [[http://dlc.sun.com/pdf/819-5262/819-5262.pdf|11.1.4 Underscores in Routine Names]] ====== Tests avec programme hmm ====== ===== SS12 + HPC 6 ===== <code> nemo-henry% module unload hpc82 ss12u1 ; module load hpc ss12 nemo-henry% which mpcc /opt/SUNWhpc/bin/mpcc nemo-henry% make clean Nettoyage rm -f *.o *.mod *.fig *.vtk; nemo-henry% make -f Makefile.hmm hmm complete: Command not found complete: Command not found mpcc -g -O5 -m64 -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -c mpi_sol_hypre.c mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c mod_dessin.f90 mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c mod_maillage.f90 mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c mod_castests.f90 mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c mod_reslin.f90 mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c mod_interface_hypre.f90 mpf90 -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5 -C -Xlist -xcheck=init_local -e -fpp -DHypre -c hmm.f90 complete: Command not found complete: Command not found complete: Command not found echo /opt/SUNWhpc/bin /opt/SUNWhpc/bin mpf90 -o hmm mpi_sol_hypre.o mod_dessin.o mod_maillage.o mod_castests.o mod_reslin.o mod_interface_hypre.o hmm.o -L/local/apps/lib/amd64/opt0/lib -R/local/apps/lib/amd64/opt0/lib -L/local/apps/lib/amd64/opt0/../babel-runtime/sidl/.libs -lbHYPREClient-C -lbHYPREClient-CX -lbHYPREClient-F -lbHYPRE -lsidl -ldl -lxml2 -m64 -g -O5 -m64 -xlic_lib=sunperf -L/opt/SUNWhpc/bin/../lib/amd64 -L/local/apps/lib/amd64/opt0/lib -lHYPRE -lm -L/opt/SUNWhpc/bin/../lib/amd64 -lmpi -lfsu -lsunmath -lm -lmtsk nemo-henry% mprun -np 4 hmm Paradigme HFV (solveur: HYPRE, figures: aucun) nutest= 1 typepoly= -9 ndiv= 200 nb sommets= 40401 nb rectangles= 40000 nb aretes= 80400 nb aretes internes= 79600 \nRenumerotation des aretes: 8 passages, 5.16E-02 secondes \nzeta= 4.999999999999778E-01 aire totale= 1.000000000001004 pas= 7.07E-03 ***Resolution HYPRE (PCG+AMG)*** Iterations = 8, Residu = 5.693808e-08 pmin 4.185951532810916E-6 \t\t pmax 0.062498116067422324 Erreurs relatives:\n\tL2 p= 4.257483975064142E-5 \t Linf p= 3.607706907963071E-5 \tL2 gradp= 1.4012123382881934E-5 \ntemps execution 7.2776513 </code> ===== SS12u1 + HPC 8.2 ===== <code> nemo-henry% module unload hpc ss12; module load hpc82 ss12u1 nemo-henry% make clean nemo-henry% make -f Makefile.hmm hmm nemo-henry% mpirun -np 4 hmm [nemo:28041] *** Process received signal *** [nemo:28041] Signal: Segmentation Fault (11) [nemo:28041] Signal code: Address not mapped (1) [nemo:28041] Failing at address: 6e65706f6c64 [nemo:28044] *** Process received signal *** [nemo:28044] Signal: Segmentation Fault (11) [nemo:28044] Signal code: Address not mapped (1) [nemo:28044] Failing at address: 6e65706f6c64 [nemo:28047] *** Process received signal *** [nemo:28047] Signal: Segmentation Fault (11) [nemo:28047] Signal code: Address not mapped (1) [nemo:28047] Failing at address: 6e65706f6c64 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2 /lib/amd64/libc.so.1:0xd71b6 /lib/amd64/libc.so.1:0xcbab2 0x6e65706f6c64 [ Signal 11 (SEGV)] /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28 /local/henry/droniou_hypre/hmm:MAIN_+0xab /local/henry/droniou_hypre/hmm:main+0x3d /local/henry/droniou_hypre/hmm:0x2c5dc [nemo:28041] *** End of error message *** /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2 /lib/amd64/libc.so.1:0xd71b6 /lib/amd64/libc.so.1:0xcbab2 0x6e65706f6c64 [ Signal 11 (SEGV)] /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28 /local/henry/droniou_hypre/hmm:MAIN_+0xab /local/henry/droniou_hypre/hmm:main+0x3d /local/henry/droniou_hypre/hmm:0x2c5dc [nemo:28044] *** End of error message *** /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2 /lib/amd64/libc.so.1:0xd71b6 /lib/amd64/libc.so.1:0xcbab2 0x6e65706f6c64 [ Signal 11 (SEGV)] /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28 /local/henry/droniou_hypre/hmm:MAIN_+0xab /local/henry/droniou_hypre/hmm:main+0x3d /local/henry/droniou_hypre/hmm:0x2c5dc [nemo:28047] *** End of error message *** [nemo:28050] *** Process received signal *** [nemo:28050] Signal: Segmentation Fault (11) [nemo:28050] Signal code: Address not mapped (1) [nemo:28050] Failing at address: 6e65706f6c64 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2 /lib/amd64/libc.so.1:0xd71b6 /lib/amd64/libc.so.1:0xcbab2 0x6e65706f6c64 [ Signal 11 (SEGV)] /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110 /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd /opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28 /local/henry/droniou_hypre/hmm:MAIN_+0xab /local/henry/droniou_hypre/hmm:main+0x3d /local/henry/droniou_hypre/hmm:0x2c5dc [nemo:28050] *** End of error message *** -------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 28041 on node nemo exited on signal 11 (Segmentation Fault). -------------------------------------------------------------------------- 3 total processes killed (some possibly by mpirun during cleanup) </code> hypre_patches.txt Dernière modification : 2017/08/25 09:56de 127.0.0.1