hypre_patches

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hypre_patches [2009/07/16 13:44] – gerardhypre_patches [2017/08/25 09:56] (Version actuelle) – modification externe 127.0.0.1
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   * le configure cree le fichier Makefile.config depuis le template Makefile.config.in dans le répertoire config   * le configure cree le fichier Makefile.config depuis le template Makefile.config.in dans le répertoire config
 +  * après exécution de configure, on modifie le fichier Makefile.config pour qu'il prenne en compte la sunperf
 +  * <del>et on modifie le script babel-runtime/libtool pour supprimer ''-z text'' à l'édition de liens</del>
 +  * {{do_work.sh|script}} pour recompiler hypre 
  
 ====== détection architecture ====== ====== détection architecture ======
Ligne 22: Ligne 25:
            Version=`$UNAME -r`            Version=`$UNAME -r`
 </code> </code>
 +
 +
 +
  
 ====== ld: fatal: relocations remain against allocatable but non-writable sections ====== ====== ld: fatal: relocations remain against allocatable but non-writable sections ======
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 </code> </code>
-et la faire disparaître si on supprime ''-z text'', mais est ce normal?+et la faire disparaître si on supprime ''-z text'', mais est ce normal? voir [[http://dlc.sun.com/pdf/819-5263/819-5263.pdf|3.4.182 –ztext]]
  
 patch patch
-<code>+<del><code>
 > diff -u ../../../src/babel-runtime/m4/libtool.m4.ori ../../../src/babel-runtime/m4/libtool.m4 > diff -u ../../../src/babel-runtime/m4/libtool.m4.ori ../../../src/babel-runtime/m4/libtool.m4
 --- ../../../src/babel-runtime/m4/libtool.m4.ori        2005-11-14 22:20:09.000000000 +0100 --- ../../../src/babel-runtime/m4/libtool.m4.ori        2005-11-14 22:20:09.000000000 +0100
Ligne 60: Ligne 66:
         _LT_AC_TAGVAR(archive_expsym_cmds, $1)='$echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~$echo "local: *; };" >> $lib.exp~         _LT_AC_TAGVAR(archive_expsym_cmds, $1)='$echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~$echo "local: *; };" >> $lib.exp~
  
 +</code></del>
 +
 +c'est un bug spécifique à la plateforme x86_64, il faut ajouter un flag d'optimisation (ou -fast par exemple)
 +
 +====== checking for Fortran name-mangling scheme... unknown ======
 +cette erreur concerne l'interface C-Fortran. Le configure semble trouver que c'est correct 2 fois, et échoue 1 fois. 
 +\
 +Il faut ajouter l'option: ''-ext_names=plain'' pour que le programme de test compile. Mais est ce que c'est à faire tout le temps?
 +voir [[http://dlc.sun.com/pdf/819-5262/819-5262.pdf|11.1.4 Underscores in Routine Names]]
 +
 +
 +====== Tests avec programme hmm ======
 +===== SS12 + HPC 6 =====
 +<code>
 +nemo-henry% module unload hpc82 ss12u1 ; module load hpc ss12
 +nemo-henry% which mpcc
 +/opt/SUNWhpc/bin/mpcc
 +nemo-henry% make clean
 +Nettoyage
 +rm -f *.o *.mod *.fig *.vtk;
 +nemo-henry% make -f Makefile.hmm hmm
 +complete: Command not found
 +complete: Command not found
 +mpcc -g -O5 -m64  -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -c mpi_sol_hypre.c
 +mpf90 -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -c mod_dessin.f90
 +mpf90 -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -c mod_maillage.f90
 +mpf90 -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -c mod_castests.f90
 +mpf90 -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -c mod_reslin.f90
 +mpf90 -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -c mod_interface_hypre.f90
 +mpf90 -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -I/local/apps/lib/amd64/opt0/include -DHAVE_CONFIG_H -DHYPRE_TIMING -g -m64 -O5  -C -Xlist -xcheck=init_local -e -fpp -DHypre  -c hmm.f90
 +complete: Command not found
 +complete: Command not found
 +complete: Command not found
 +echo /opt/SUNWhpc/bin
 +/opt/SUNWhpc/bin
 +mpf90 -o hmm mpi_sol_hypre.o mod_dessin.o mod_maillage.o mod_castests.o mod_reslin.o mod_interface_hypre.o hmm.o -L/local/apps/lib/amd64/opt0/lib -R/local/apps/lib/amd64/opt0/lib -L/local/apps/lib/amd64/opt0/../babel-runtime/sidl/.libs -lbHYPREClient-C -lbHYPREClient-CX -lbHYPREClient-F -lbHYPRE -lsidl -ldl -lxml2 -m64 -g -O5 -m64  -xlic_lib=sunperf -L/opt/SUNWhpc/bin/../lib/amd64 -L/local/apps/lib/amd64/opt0/lib -lHYPRE -lm -L/opt/SUNWhpc/bin/../lib/amd64 -lmpi -lfsu -lsunmath -lm -lmtsk
 +nemo-henry% mprun -np 4 hmm
 +  Paradigme HFV   (solveur: HYPRE, figures: aucun)
 +nutest=   1      typepoly=  -9
 +ndiv= 200      nb sommets=    40401      nb rectangles=    40000
 +          nb aretes=    80400      nb aretes internes=    79600
 +\nRenumerotation des aretes:  8 passages,   5.16E-02 secondes
 +\nzeta=  4.999999999999778E-01     aire totale= 1.000000000001004     pas=  7.07E-03
 +
 +***Resolution HYPRE (PCG+AMG)*** Iterations = 8, Residu = 5.693808e-08
 +
 + pmin  4.185951532810916E-6 \t\t pmax  0.062498116067422324
 + Erreurs relatives:\n\tL2 p= 4.257483975064142E-5 \t Linf p= 3.607706907963071E-5
 + \tL2 gradp= 1.4012123382881934E-5
 + \ntemps execution 7.2776513
 </code> </code>
  
 +===== SS12u1 + HPC 8.2 =====
 +<code>
 +nemo-henry% module unload hpc ss12; module load hpc82 ss12u1
 +nemo-henry% make clean
 +nemo-henry% make -f Makefile.hmm hmm
 +nemo-henry% mpirun -np 4 hmm
 +[nemo:28041] *** Process received signal ***
 +[nemo:28041] Signal: Segmentation Fault (11)
 +[nemo:28041] Signal code: Address not mapped (1)
 +[nemo:28041] Failing at address: 6e65706f6c64
 +[nemo:28044] *** Process received signal ***
 +[nemo:28044] Signal: Segmentation Fault (11)
 +[nemo:28044] Signal code: Address not mapped (1)
 +[nemo:28044] Failing at address: 6e65706f6c64
 +[nemo:28047] *** Process received signal ***
 +[nemo:28047] Signal: Segmentation Fault (11)
 +[nemo:28047] Signal code: Address not mapped (1)
 +[nemo:28047] Failing at address: 6e65706f6c64
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2
 +/lib/amd64/libc.so.1:0xd71b6
 +/lib/amd64/libc.so.1:0xcbab2
 +0x6e65706f6c64 [ Signal 11 (SEGV)]
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28
 +/local/henry/droniou_hypre/hmm:MAIN_+0xab
 +/local/henry/droniou_hypre/hmm:main+0x3d
 +/local/henry/droniou_hypre/hmm:0x2c5dc
 +[nemo:28041] *** End of error message ***
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2
 +/lib/amd64/libc.so.1:0xd71b6
 +/lib/amd64/libc.so.1:0xcbab2
 +0x6e65706f6c64 [ Signal 11 (SEGV)]
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28
 +/local/henry/droniou_hypre/hmm:MAIN_+0xab
 +/local/henry/droniou_hypre/hmm:main+0x3d
 +/local/henry/droniou_hypre/hmm:0x2c5dc
 +[nemo:28044] *** End of error message ***
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2
 +/lib/amd64/libc.so.1:0xd71b6
 +/lib/amd64/libc.so.1:0xcbab2
 +0x6e65706f6c64 [ Signal 11 (SEGV)]
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28
 +/local/henry/droniou_hypre/hmm:MAIN_+0xab
 +/local/henry/droniou_hypre/hmm:main+0x3d
 +/local/henry/droniou_hypre/hmm:0x2c5dc
 +[nemo:28047] *** End of error message ***
 +[nemo:28050] *** Process received signal ***
 +[nemo:28050] Signal: Segmentation Fault (11)
 +[nemo:28050] Signal code: Address not mapped (1)
 +[nemo:28050] Failing at address: 6e65706f6c64
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x4b9a2
 +/lib/amd64/libc.so.1:0xd71b6
 +/lib/amd64/libc.so.1:0xcbab2
 +0x6e65706f6c64 [ Signal 11 (SEGV)]
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x2bcd4
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:lt_dlopenadvise+0x9e
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33a8b
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:0x33292
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_component_find+0x2c7
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:mca_base_components_open+0x193
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_paffinity_base_open+0xc1
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-pal.so.0.0.0:opal_init+0x57
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libopen-rte.so.0.0.0:orte_init+0x2a
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:ompi_mpi_init+0x110
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi.so.0.0.0:PMPI_Init+0xcd
 +/opt/SUNWhpc/HPC8.2/sun/lib/amd64/libmpi_f77.so.0.0.0:pmpi_init_+0x28
 +/local/henry/droniou_hypre/hmm:MAIN_+0xab
 +/local/henry/droniou_hypre/hmm:main+0x3d
 +/local/henry/droniou_hypre/hmm:0x2c5dc
 +[nemo:28050] *** End of error message ***
 +--------------------------------------------------------------------------
 +mpirun noticed that process rank 0 with PID 28041 on node nemo exited on signal 11 (Segmentation Fault).
 +--------------------------------------------------------------------------
 +3 total processes killed (some possibly by mpirun during cleanup)
 +
 +</code>
  • hypre_patches.1247744674.txt.gz
  • Dernière modification : 2017/08/25 09:55
  • (modification externe)