logiciels [Réseau informatique ]

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[[http://www.latp.univ-mrs.fr/~henry/reseau/logiciels/|Ancien lien]]




====== Logiciels scientifiques ======

===== Logiciels commerciaux, soumis à licences =====

^ Logiciels ^ machines ^ Version installée ^ Date ^ Documentation ^ Commentaires ^
| [[matlab]] | signal,judith | 2018b |  |  |  |

===== Logiciels équivalents gratuits =====

^ Logiciels ^ machines ^ Version installée ^ Date ^ Documentation ^ Commentaires ^
| [[scilab]] | nemo, octopus |  |  |  |   |
| [[Octave]] | toutes |  |  |  |   |
| [[http://www.sagemath.org|sage]] | octopus | 5.11 |  |  | [[reserve:logiciel_sage|Notes]]  |
| [[http://www.sagemath.org|sage]] | penelope | 6.3 |  | /local/apps/src/sage-6.3/sage | [[reserve:logiciel_sage|Notes]]  |
| [[http://www.r-project.org|R]] | nemo | 2.6.1 |  |  | [[logiciel_R|Notes]] |
| [[mathemagix]] | octopus |  | 25 mai 10 |  | Système de calcul formel et analytique généraliste |
| [[axiom]] | octopus |  | 25 mai 10 |  |  |

===== Autres logiciels =====

^ Logiciels ^ machines ^ Version installée ^ Date ^ Documentation ^ Commentaires ^
| svn | toutes | | sept 05 | [[subversion]] | [[support@cmi.univ-mrs.fr|demander]] un compte sur le serveur subversion de mathrice |
| cvs | toutes | | | [[cvs]] | [[support@cmi.univ-mrs.fr|demander]] un compte sur le serveur CVS du CMI |
| [[compilateurs Sun]] | nemo, slatp, shrek | | | | |
| [[compilateurs Intel]] | slatp, shrek | | | /opt/intel/.../doc/ | |
| [[MPI]] | nemo | Mpich, MPI, OpenMPI  |  | |
| [[MPI|MPICH]] | nemo, slatp, shrek |  |  |  |   |
| [[http://developers.sun.com/solaris/articles/omp-intro.html|OpenMP]] | nemo |  |  |  | inclus dans les compilateurs Sun Studio |
| [[ATLAS]] | shrek | 3.6.0 |  |  |   |
| [[AMD Performance Library]] | nemo | 4.0.0 |  | [[http://developer.amd.com/acml3.jsp|(AMD Core Math Library) (BLAS, Lapack,FFT)]] | 64 bits uniquement  |
| [[BLAS]] | nemo, slatp, shrek |  |  |  | [[http://www.tacc.utexas.edu/resources/software/#blas|GotoBLAS]]  |

^ Logiciels ^ machines ^ Version installée ^ Date ^ Documentation ^ Commentaires ^
| [[CBLAS]] | nemo |  |  |  |   |
| [[LAPACK]] | nemo, slatp, shrek |  |  |  |   |
| [[BLACS]] | nemo |  |  |  |   |
| [[ScaLAPACK]] | nemo |  |  |  |   |
| [[UMFPACK]] | nemo |  |  |  |   |
| [[PETSC]] | nemo |  |  |  |   |
| [[Pelicans]] | nemo |  |  |  |   |
| [[Hypre]] | nemo |  |  |  |   |
| [[Mumps]] | nemo |  |  |  |   |
| [[http://www-xdiv.lanl.gov/XCM/gmv/GMVHome.html|gmv]] | nemo, slatp et shrek |  |  | [[notes_gmv|notes]] | [[ftp://serengheti/gmv|binaires linux]] et   |
| [[Dune]] | octopus |  |  |  |   |

^ Logiciels ^ machines ^ Version installée ^ Date ^ Documentation ^ Commentaires ^
| [[Pari]] | nemo | 2.2 |  |  |  [[http://www.math.kobe-u.ac.jp/OpenXM/Current/doc/asir2000/html-eg/man_10.html#SEC10|Notes]] |
| [[http://www.math.kobe-u.ac.jp/Asir/asir.html|Asir]] | nemo | 20060809 |  |  | [[asir|Notes]] |
| [[http://www.boost.org|Boost]] | nemo | 1.34.1 |  |  | [[boost|Notes]] |
| [[http://www.gnu.org/software/gsl/|gsl]] | nemo, octopus | 1.9 sur nemo, 1.13-3 sur octopus |  |  | [[gsl|Notes]] |
| [[|gmsh]] | nemo | 2.2.3 |  |  | [[gmsh|Notes]] |
| [[Macaulay2]] |  |  |  |  |  |
| [[scipy]] |  |  |  |  | Scientific Tools for Python |
| [[MPTK]] |  |  |  |  | the Matching Pursuit ToolKit |
| [[PyML]] |  |  |  |  | PyML is an interactive object oriented framework for machine learning written in python |

^ Logiciels ^ machines ^ Version installée ^ Date ^ Documentation ^ Commentaires ^
| [[paraview|Paraview]] |  |  |  |  |  |
| [[k3]] |  |  |  |  |  |
| [[boost]] |  |  |  |  |  |
| [[Tix]] |  |  |  |  |  |
| [[graphviz]] |  |  |  |  |  |
| [[matplotlib]] |  |  |  |  |  |
| [[arpack]] |  |  |  |  |  |
| [[Apache C++ stdlib]] |  |  |  |  |  |
| [[NONMEM]] | nemo | 6.1.0 |  |  | [[http://c255.ucsf.edu/nonmem1.html|non-linear mixed effects modeling.]] |
| [[HSL]] | nemo |  |  |  | [[http://hsl.rl.ac.uk/archive/hslarchive.html|HSL Archive]] |
| [[FreeFem++]] | octopus | 3.13.2 | juil 11 | [[http://www.freefem.org/ff++]] | FreeFem++ is an implementation of a language dedicated to the finite element method. It enables you to solve Partial Differential Equations (PDE) easily. |
| [[silo]] | octopus | 4.8 | oct 11 | [[https://wci.llnl.gov/codes/silo/downloads.html]] |  |

====== Logiciels bureautique ======

**Kaspersky Endpoint**

Clé jusqu'au 15 juin 2020

YWUCQ-PU2Z2-9QF6K-ZS4DV



Activation licence Mac : Dans un terminal : kav addkey my.key avec droits admin
===== Latex =====
2 distributions sont disponibles sur les serveurs calypso/mombasa/protis:
  * Gutenberg/TexLive7 disponible par défaut
<code>
mombasa-henry% /opt/csw/bin/latex poster_cfm07.tex
</code>
  * Tetex 3.0, plus récente, modifier le PATH pour l'utiliser

<code>
mombasa-henry% which latex
/usr/local/TeX/TL7/bin/sparc-solaris2.7/latex
mombasa-henry% setenv PATH /opt/csw/bin:${PATH}
mombasa-henry% which latex
/opt/csw/bin/latex

</code>

Par exemple, cette version plus récente permet de compiler sans problème les posters.

<code>
mombasa-root% (setenv PATH /opt/csw/bin:${PATH}; texconfig)
=========================== version information ==========================
teTeX-src release:   3.0
teTeX-texmf release: 3.0

==================== binaries found by searching $PATH ===================
PATH=/opt/csw/bin:/usr/openwin/bin/xview:/usr/openwin/bin:/bin:/usr/bin:/usr/sbin:/usr/local/TeX/TL7/bin/sparc-solaris2.7/:/usr/local/bin:/opt/csw/bin:/usr/sfw/bin:/opt/sfw/bin:/usr/ccs/bin:/opt/SUNWspro/bin:/opt/SUNWut/bin:/opt/SUNWut/sbin:/usr/dt/bin:/usr/sadm/admin/bin:/usr/sadm/bin:/opt/SUNWppro/bin:/opt/NSCPcom:/usr/bin/nsr:/opt/local/bin:/usr/platform/sun4u/sbin:/opt/rsc/bin:/usr/local/mysql/bin:/opt/hpnpl/bin:/usr/local/cap/cap60/bin:/usr/local/apache/bin:/usr/local/BerkeleyDB.3.2/bin:/usr/ucb:/opt/SUNWseam/3_0/bin:/usr/local/nttcp-1.47:/opt/atalk/bin:/usr/pkg/sbin:/usr/pkg/bin
kpsewhich: /opt/csw/bin/kpsewhich
updmap: /opt/csw/bin/updmap
fmtutil: /opt/csw/bin/fmtutil
texconfig: /opt/csw/bin/texconfig
tex: /opt/csw/bin/tex
pdfetex: /opt/csw/bin/pdfetex
mktexpk: /opt/csw/bin/mktexpk
dvips: /opt/csw/bin/dvips
dvipdfm: /opt/csw/bin/dvipdfm

=========================== active config files ==========================
/opt/csw/share/texmf-config/dvips/config/config.ps
/opt/csw/share/texmf-dist/dvipdfm/config/config
/opt/csw/share/texmf-dist/tex/generic/config/pdftexconfig.tex
/opt/csw/share/texmf-dist/web2c/mktex.cnf
/opt/csw/share/texmf-dist/web2c/updmap.cfg
/opt/csw/share/texmf/web2c/fmtutil.cnf
/opt/csw/share/texmf/web2c/texmf.cnf
/opt/csw/share/texmf/xdvi/XDvi

============================= font map files =============================
psfonts.map: /opt/csw/share/texmf-var/fonts/map/dvips/updmap/psfonts.map
pdftex.map: /opt/csw/share/texmf-var/fonts/map/pdftex/updmap/pdftex.map
ps2pk.map: /opt/csw/share/texmf-var/fonts/map/dvips/updmap/ps2pk.map
dvipdfm.map: /opt/csw/share/texmf-var/fonts/map/dvipdfm/updmap/dvipdfm.map

=========================== kpathsea variables ===========================
TEXMFMAIN=/opt/csw/share/texmf
TEXMFDIST=/opt/csw/share/texmf-dist
TEXMFLOCAL=/opt/csw/share/texmf-local
TEXMFSYSVAR=/opt/csw/share/texmf-var
TEXMFSYSCONFIG=/opt/csw/share/texmf-config
TEXMFVAR=/root/.texmf-var
TEXMFCONFIG=/root/.texmf-config
TEXMFHOME=/root/texmf
VARTEXFONTS=/var/tmp/texfonts
TEXMF={!!/root/.texmf-config,!!/root/.texmf-var,/root/texmf,!!/opt/csw/share/texmf-config,!!/opt/csw/share/texmf-var,!!/opt/csw/share/texmf,!!/opt/csw/share/texmf-local,!!/opt/csw/share/texmf-dist}
SYSTEXMF=/opt/csw/share/texmf-local:/opt/csw/share/texmf:/opt/csw/share/texmf-dist
TEXMFDBS={!!/root/.texmf-config,!!/root/.texmf-var,/root/texmf,!!/opt/csw/share/texmf-config,!!/opt/csw/share/texmf-var,!!/opt/csw/share/texmf,!!/opt/csw/share/texmf-local,!!/opt/csw/share/texmf-dist}:/var/tmp/texfonts
WEB2C={!!/root/.texmf-config,!!/root/.texmf-var,/root/texmf,!!/opt/csw/share/texmf-config,!!/opt/csw/share/texmf-var,!!/opt/csw/share/texmf,!!/opt/csw/share/texmf-local,!!/opt/csw/share/texmf-dist}/web2c
TEXPSHEADERS=.:{!!/root/.texmf-config,!!/root/.texmf-var,/root/texmf,!!/opt/csw/share/texmf-config,!!/opt/csw/share/texmf-var,!!/opt/csw/share/texmf,!!/opt/csw/share/texmf-local,!!/opt/csw/share/texmf-dist}/{dvips,fonts/{enc,type1,type3}}//TEXCONFIG={!!/root/.texmf-config,!!/root/.texmf-var,/root/texmf,!!/opt/csw/share/texmf-config,!!/opt/csw/share/texmf-var,!!/opt/csw/share/texmf,!!/opt/csw/share/texmf-local,!!/opt/csw/share/texmf-dist}/dvips//
ENCFONTS=.:{!!/root/.texmf-config,!!/root/.texmf-var,/root/texmf,!!/opt/csw/share/texmf-config,!!/opt/csw/share/texmf-var,!!/opt/csw/share/texmf,!!/opt/csw/share/texmf-local,!!/opt/csw/share/texmf-dist}/fonts/enc//
TEXFONTMAPS=.:{!!/root/.texmf-config,!!/root/.texmf-var,/root/texmf,!!/opt/csw/share/texmf-config,!!/opt/csw/share/texmf-var,!!/opt/csw/share/texmf,!!/opt/csw/share/texmf-local,!!/opt/csw/share/texmf-dist}/fonts/map//

==== kpathsea variables (from environment only; ok if no output here) ====

</code>